application of microbial genetics in industries

J. doi: 10.1038/nrmicro2637, DSouza, S. F. (2001). He then became an admirer of the microscopic universe, describing the association of microorganisms with diseases and proposing vaccination methods such as used against anthrax (1881) and human rabies (1885) (Pasteur, 2002; Plotkin and Plotkin, 2011). Polygenic analysis and targeted improvement of the complex trait of high acetic acid tolerance in the yeast Saccharomyces cerevisiae. doi: 10.1038/nature14486. doi: 10.1016/S0032-9592(02)00332-1, Saravanakumar, K., Yu, C., Dou, K., Wang, M., Li, Y., and Chen, J. Trends Genet. J. Bacteriol. 35, 1721. The American economic expansion brought on by the end of World War II and known as the Golden Age of Capitalism (Stephen et al., 1991), as well as the knowledge of microbial genetics that was emerging at that time (e.g., Zinder and Lederberg, 1952; Jacob et al., 1960; Ames and Martin, 1964; Holloway, 1969; Sussman, 1970; Bagdasarian and Timmis, 1982), stimulated the emergence of microorganism-based industrial processes, triggering modern Technological Microbiology. These include food production, probiotics, cosmetics . Mycorrhizal fungi and roots are complementary in foraging within nutrient patches. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Annu. (2008). doi: 10.1021/acs.jafc.6b01051, Magill, S. S., Edwards, J. R., Bamberg, W., Beldavs, Z. G., Dumyati, G., Kainer, M. A., et al. AIMS Microbiol. (2016). Among the latter are 4-hydroxybenzoate, tyrosine, and phenylalanine, which are precursors common to a large number of non-native commercial products (Zhang et al., 2016). Environ. (2016). Cellulases and pectinases, used especially in juice clarification and viscosity reduction, have also been easily recovered from cultures of filamentous fungi that are efficient in the degradation of plant biomass, such as Cladosporium sphaerospermum, Penicillium chrysogenum (Andersen et al., 2016), and Trichoderma viride (Ismail et al., 2016). This page titled 12.3: Whole Genome Methods and Industrial Applications is shared under a CC BY 4.0 license and was authored, remixed, and/or curated by OpenStax via source content that was edited to the style and standards of the LibreTexts platform; a detailed edit history is available upon request. 79, 701708. 132:41686. doi: 10.1002/APP.41686, Pitisuttithum, P., and Bouckenooghe, A. Goswami, R., Chattopadhyay, P., Shome, A., Banerjee, S. N., Chakraborty, A. K., Mathew, A. K., et al. Lipases microbianas: produo, propriedades e aplicaes biotecnolgicas. doi: 10.1016/j.jbiotec.2008.06.003, Kummerfeldt, C. E. (2014). doi: 10.1016/S0168-1656(01)00423-0, Beck, A. doi: 10.1073/pnas.0407921102, McIntosh, S., Zhang, Z., Palmer, J., Wong, H.-H., Doherty, W. O. S., and Vancov, T. (2016). This is a challenge to be faced by Technological Microbiology in the coming years. Chitosan can be easily recovered from the cell wall of fungi such as A. niger, Rhizopus oryzae, Cunninghamella elegans, and Mucor indicus, among others (Pochanavanich and Suntornsuk, 2002; Franco et al., 2004; Ruholahi et al., 2016; Abdel-Gawad et al., 2017). Agarose bioplastic-based drug delivery system for surgical and wound dressings. The versatility of these microbes has enhanced the study and application of them in biotechnology, industry, and medical field. DNA Modification and Restriction. Biotechnol. Additionally, researchers can use reverse genetics, a technique related to classic mutational analysis, to determine the function of specific genes. Appl. Nanomedicine 11, 23872398. (2016). By contrast, females infected with the bacterium will produce the highest number of viable offspring, increasing the number of infected individuals in the population (Figure 3A). DNA vaccines: protective immunizations by parenteral, mucosal, and gene-gun inoculations. J. Trop. (2014). doi: 10.1111/jam.13113, Tong, Z., Qingxiang, Z., Hui, H., Qin, L., Yi, Z., and Min, Q. doi: 10.1016/j.ijbiomac.2016.03.018, Tayel, A. The use of viral promoters enhances gene expression and improves mRNA stability related to antigen synthesis. doi: 10.1016/S0956-5663(01)00125-7, Duke, S. O., Scheffler, B. E., Boyette, C. D., and Dayan, F. E. (2015). doi: 10.1016/j.jfoodeng.2015.03.031, Paterson, R. R. M. (2006). 82, 438449. Kinetic study on the removal of toxic phenol and chlorophenol from waste water by horseradish peroxidise. Sci. 1. Microbiol. doi: 10.1016/j.bioelechem.2006.08.001, Tiquia, S. M., Wan, H. C., and Tam, N. F. Y. Common reporter genes include bacterial lacZ, which encodes beta-galactosidase and whose activity can be monitored by changes in colony color in the presence of X-gal as previously described, and the gene encoding the jellyfish protein green fluorescent protein (GFP) whose activity can be visualized in colonies under ultraviolet light exposure (Figure \(\PageIndex{1}\)). 82, 233247. Chirality 20, 519. Today 19, 590601. These are model pesticides, as they are non-toxic to mammals and active against nematodes, even at very low doses. Rev. Microbial genetics provides powerful tools for deciphering the regulation, as well as the functional and pathway organization, of cellular processes. Over thousands of years, modernization could be predicted for the use of microorganisms in the production of foods and beverages. A solution can . Carbohydr. 37, 541551. Microbial techniques (selection, isolation ofpureculture,muta-tion,protoplast fusion, etc. The use of biofactories does not end there: microorganisms have been explored for the synthesis of diverse chemicals, fuel molecules, and industrial polymers, and strains environmentally important due to their biodecomposing or biosorption capacity have gained interest in research laboratories and in industrial activities. Biosynthesis of xanthan gum by Xanthomonas campestris LRELP-1 using kitchen waste as the sole substrate. doi: 10.1016/j.biortech.2003.10.018, Ismail, A.-M., Abo-Elmagd, H., and Housseiny, M. M. (2016). The metabolic engineering of molecules from microorganisms has been stimulated mainly by the need for new functional biomaterials in emerging drugs (nanostructured or not) (Vzquez and Villaverde, 2013). Samuel, D. (1996). Pharmaceutics 8, 7. doi: 10.3390/pharmaceutics8010007, Nizet, V. (2015). In 1976, a thermostable DNA polymerase was isolated from the bacterium Thermus aquaticus. FEMS Yeast Res. Accessibility StatementFor more information contact us atinfo@libretexts.orgor check out our status page at https://status.libretexts.org. (2009). 72, 310316. Probiotics are living microorganisms that have been linked to host health benefits (Gawkowski and Chikindas, 2016). doi: 10.1016/S0376-7388(01)00626-3, Ames, B. N., and Martin, R. G. (1964). 25, 690701. Technol. Arbuscular mycorrhizal fungi are an alternative to the application of chemical fertilizer in the production of the medicinal and aromatic plant Coriandrum sativum L. J. Toxicol. doi: 10.1046/j.1472-765X.2002.01118.x, Popham, H. J. R., Nusawardani, T., and Bonning, B. C. (2016). Value-added food: single cell protein. These bacteria are transmitted vertically from the female to the offspring. (2015) developed an important method that allowed the in situ growth of soil microorganisms not cultivable under laboratory conditions. U.S.A. 74, 50885090. Traditional covalent linkages between carbohydrates and carrier proteins have been used to increase immune responses to polysaccharide antigens (Nishat and Andreana, 2016), thereby obtaining conjugate vaccines. J. Membr. The main applications of fungi, bacteria, and viruses for obtaining new or improved products. doi: 10.1126/science.2448875, Saitoh, S., Ishida, N., Onishi, T., Tokuhiro, K., Nagamori, E., Kitamoto, K., et al. doi: 10.1128/AEM.71.5.2789-2792. Progress in the commercialisation of bionematicides. Leptospirillum ferrooxidans basead Fe 2+ sensor. doi: 10.1016/j.biomaterials.2004.02.049, Tag, K., Riedel, K., Bauer, H. J., Hanke, G., Baronian, K. H. R., and Kunze, G. (2007). Enzyme Microb. Extremophiles and biotechnology: current uses and prospects. doi: 10.1016/S0734-9750(00)00045-8, Appels, L., Baevens, J., Degrve, J., and Dewil, R. (2008). Microbial lipases are produced through bacteria, fungi and yeast. San Diego, CA: Academic Press. Microbiol. Soil Biol. 5, 14. A large number of substances with nanomedical application have emerged, including polymers, metallic nanoparticles, magnetic nanoparticles, VLPs, virions or virion components, and a growing diversity of self-organized protein materials, some with adjustable biomechanical properties such as stiffness, elasticity, adhesion or controllable disintegration or release of incorporated functional blocks or conventional chemical drugs (Rodriguez-Carmona and Villaverde, 2010). Ann. doi: 10.1016/j.watres.2008.02.025, Smith, H. O., and Nathans, D. (1973). doi: 10.1016/j.biortech.2016.04.077, Sussman, M. (1970). doi: 10.1016/j.wasman.2015.12.032, Philip, S., Keshavarz, T., and Roy, I. Several transgenic species expressing Bt protein crystals, such as tomato, tobacco, and corn, have been cultivated worldwide because they have been successful in preventing the spread of caterpillars, especially Lepidoptera (Khan et al., 2016). (www.glofish.com). Selection of -lyase-producing yeasts improves aromatic thiol release and, consequently, the sensory properties of wines (Belda et al., 2016), whereas the selection of yeasts specializing in certain processes such as flocculation may improve the fermentation of special wines such as sparkling wines (Tofalo et al., 2016). (2016). Genomic responses to drugs can be studied using experimental animals (such as laboratory rats or mice) or live cells in the laboratory before embarking on studies with humans. Glycerol production by microbial fermentation: a review. 5, 399409. 15, 795798. J. Bras. The groups biodiversity, however, also means microorganisms offer the greatest potential for the exploration of molecules and processes, and the knowledge of unconventional species, especially within the Archaea group, has stimulated the research of genes of interest. Modification of genetic components of bacteria and manipulation of enzymatic action offer dramatic prospects in dairy industry. Afr. Radecka, I. K., Guozhan, J., Hill, D. J., and Kowalczuk, M. M. (2016). Chojnacka, A., Szczsny, P., Baszczyk, M. K., Zielenkiewicz, U., Detman, A., Salamon, A., et al. However, the current accelerated pace of new food production is due to the rapid incorporation of biotechnological techniques that allow the rapid identification of new molecules and microorganisms or even the genetic improvement of known species. 102, 141153. (2005). doi: 10.1073/pnas.70.11.3240, Coker, J. For example, approximately 30% of commercially available recombinant proteins are currently produced in prokaryotic systems (Overton, 2014). Proteomics may be used to study which proteins are expressed under various conditions within a single cell type or to compare protein expression patterns between different organisms. Biosens. Vaccin. 4:FUNK-0012-2016. Technol. 67, 217228. In modern biorefineries, renewable resources such as biomass or waste products are converted into substrates susceptible to microbial action (Sauer, 2016), and thus, interest in bio-based chemicals has recently been renewed because increasing climate change and environmental problems have pushed the industry, moving it away from fossil fuel consumption and toward renewable raw materials (Moon et al., 2016). Natl Acad. Trop. Environ. Thus, filtrates of B. firmus cultures induce paralysis and mortality of adult nematodes and larvae, including Radopholus similis, Meloidogyne incognita, and Ditylenchus dipsaci, which suggests that the synthesis of toxic metabolites (Mendoza et al., 2008) is involved in the control of these pests. Bechor, O., Smulski, D. R., Van Dyk, T. K., LaRossa, R. A., and Belkin, S. (2002). doi: 10.1016/j.jhazmat.2016.02.011, Borghesi, A., and Stronati, M. (2015). (2017). doi: 10.1016/S0079-6603(08)60204-4, Astronomo, R. D., and Burton, D. R. (2010). (2006). Polysaccharides of secondary metabolites can be obtained using Ganoderma lucidum, Cordyceps sinensis, and C. militaris (Paterson, 2006, 2008; Wadt et al., 2015). 24, 13631382. Science 239, 487491. Rep. 6, 37155. doi: 10.1038/srep37155, Awadhiya, A., Tyeb, S., Rathore, K., and Verma, V. (2016). Bioresour. Genomic expansion of domain Archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Technol. doi: 10.1007/978-3-319-29573-2_13, Khor, E., and Lim, L. Y. Stephen, A., Marglin, S. A., and Schor, J. Polymyxins: a new hope in combating Gram-negative superbugs? The Golden Age of Capitalism. Biopharm. In vitro activity of Bacillus firmus against the burrowing nematode Radopholus similis the root-knot nematode Meloidogyne incognita and the stem nematode Ditylenchus dipsaci. Nutr. Microbiol. The microorganisms are then grown on an industrial scale to synthesize products such as insulin, vaccines, and biodegradable polymers. Since then, the improvement of new heterologous protein production systems via E. coli enabled the commercial approval of several other products, including hormones (calcitonin, parathyroid hormone, human growth hormone, glucagon, and somatropin), interferons, and interleukins (Ferrer-Miralles et al., 2009). doi: 10.1080/09583157.2014.940847, Jozala, A. F., Geraldes, D. C., Tundisi, L. L., Feitosa, V. A., Breyer, C. A., Cardoso, S. L., et al. This functional characteristic of Trichoderma and other biocontrol species responds to the increasing call for practices that minimize the side effects left by pesticides, such as resistance in pest populations, reduction of soil and water quality, and the generation of residues with harmful effects on non-target organisms. Biomaterials 27, 145151. However, production in yeasts, such as S. cerevisiae and Pichia pastoris, is generally required when the target protein cannot be produced in a soluble form in a prokaryotic system, when it is rich in disulfide bonds, or when a specific PTM, essential for the biological activity of the protein, cannot be artificially created from the purified product (Jenkins, 2007; Demain and Vaishnav, 2009). Applications of Microbial genetics include in medicine, veterinary, agriculture, food and pharmaceutical industries. doi: 10.1038/nrd3012, Avendao, R., Chaves, N., Fuentes, P., Snchez, E., Jimnez, J. I., and Chavarra, M. (2016). Gangadevi, V., and Muthumary, J. 67, 122128. Development of new microbial strains that are more efficient in synthesizing useful products. Sci. Metagenomics and metatranscriptomics allow researchers to study genes and gene expression from a collection of multiple species, many of which may not be easily cultured or cultured at all in the laboratory. One hundred years of clostridial butanol fermentation. Zinder, N. D., and Lederberg, J. Despite the great leap forward made by biotechnology in the area of microbial biosensor development, many challenges still need to be overcome. (2007). However, in a scenario where the cost of propylene increased because its availability decreased, especially in developing countries, glycerol became an important raw material for the production of various chemicals, which made its alternative synthesis by fermentation more attractive (Wang et al., 2001). Medium optimization for the production of amylase by Bacillus subtilis RM16 in Shake-flask fermentation. These data have also allowed the discovery of new or modified molecules used to obtain improved products, new products, or services. doi: 10.1163/156854100509114, Valach, M., Katrlik, J., Sturdik, E., and Gemeiner, P. (2009). 206, 6168. The use of arbuscular mycorrhizal fungi to improve strawberry production in coir substrate. Microbiol. The expectation is that, in the future, at least 25% of all bioenergy can originate from biogas (Holm-Nielsen et al., 2009), and therefore, studies that seek to optimize the methanogenesis process or describe the structure of microbial communities have been encouraged (e.g., Ennouri et al., 2016; Mulat et al., 2016; Suksong et al., 2016). EBioMedicine 10, 312317. A number of enzyme preparations of microbial origin have been evaluated in food processing. doi: 10.1016/j.aca.2005.11.065, Lesage-Meessen, L., Lomascolo, A., Bonnin, E., Thibault, J.-F., Buleon, A., Roller, M., et al. Trends Biotechnol. C R Sances Acad. Adv. 5, 396. doi: 10.12688/f1000research.7432.1, Cook, P. E., McMeniman, C. J., and ONeill, S. L. (2008). Cytotoxic and antibiotic cyclic pentapeptide from an endophytic Aspergillus tamarii of Ficus carica. This promotion of growth by endophytic action may be a consequence of nitrogen fixation, synthesis of phytohormones, biocontrol of phytopathogens through the synthesis of antibiotics or siderophores, competition for nutrients, and the induction of systemic disease resistance (Ahmad et al., 2016). Cell Host Microbe 21, 314315. The microorganisms are then grown on an industrial scale to synthesize products such as insulin, vaccines, and biodegradable polymers. 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Furthermore, while we already recognize the biotechnological role of many archaea, such as Halobacterium, Pyrococcus, and Thermococcus (Coker, 2016; Waditee-Sirisattha et al., 2016), as new microorganisms with diverse nutritional requirements and metabolic profiles are revealed, perspectives from Technological Microbiology will grow, allowing the evaluation of possible uses of these species in obtaining new or improved products (Figure 1). Such products include antibiotic drugs, vaccines, and hormones used to treat various diseases. (2016). The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Cell Fact. Sequencing the entire microbial genome is important for construction of accurate reference genomes, microbial identification, and other comparative genomic studies . doi: 10.1056/NEJMra1204186, Nalage, D. N., Khedkar, G. D., Kalyankar, A. D., Sarkate, A. P., Ghodke, S. R., Bedre, V. B., et al. doi: 10.1016/0264-410X(94)90194-5, Khaledi, N., and Taheri, P. (2016). Microbial cellulose has great potential for the treatment of skin lesions and replacement of small-diameter blood vessels (Czaja et al., 2006). Several sequences are present in all bacteria with slight variation, can be used in the identification of different bacteria. doi: 10.1126/scitranslmed.aab2373, Oliveira, R. S., Ma, Y., Rocha, I., Carvalho, M. F., Vostka, M., and Freitas, H. (2016a). Alginate biosynthesis factories in Pseudomonas fluorescens: localization and correlation with alginate production level. 81, 419423. These microorganisms therefore reduce the need for application of chemical fertilizers in soils (e.g., Abdel-Fattah et al., 2016; Oliveira et al., 2016a,b). Over time, the selection of improved microbial strains became frequent, as did the manipulation of other microorganisms to obtain products to meet human demands, and as a result, Technological Microbiology has become a science essentially applied to several branches of production, including food, chemical, agricultural, and pharmacological. J. Microbiol. Sokhandani, Z., Moosavi, M. R., and Basirnia, T. (2016). 88, 4552. Technol. The OPH catalyzes the hydrolysis of organophosphorus pesticides releasing protons, whose concentration is proportional to the amount of substrate analyzed (Mulchandani et al., 1998; Kim H. J. et al., 2016). On the other hand, endophytic microorganisms colonize plant tissues without triggering any disease symptoms, establishing a stable long-term interaction with the host plant. Far from abandoning it in the 21st century, we are developing new uses for biological organisms. Indian J. Exp. 6, 343357. The focus on microorganisms as an alternative in the production of biosensors is mainly due to the ability to produce them massively through cell culture (Su et al., 2011). doi: 10.1016/j.biotechadv.2003.08.014, Papagianni, M. (2004). Biotransformation of benzo[a] pyrene in bench scale reactor using laccase of Pycnoporus cinnabarinus. Secondly, they are used as factories for the production of food ingredients. Potent antibody therapeutics by design. Bioelectrochemistry 71, 3845. Proteases (EC 3.4) Proteases (EC 3.4) are enzymes that catalyse the hydrolytic cleavage of peptide bonds in proteins to yield smaller polypeptides or amino acids. Technol. 48, 247249. Microbial production of organic acids: expanding the markets. Because Kaylas symptoms were persistent and serious enough to interfere with daily activities, Kaylas physician decided to order some laboratory tests. Crit. They have found application in many industries including foods, beverages, pharmaceuticals, detergents, textiles, leather, chemicals, biofuels, animal feed, personal care, pulp and paper, diagnostics, and therapy. doi: 10.1016/S0926-3373(00)00168-5, Durbin, A. P. (2016). Res. Is there an optimal formulation and delivery strategy for subunit vaccines? Biotechnol. J. Biol. J. Agric. One such technology employs microorganisms, such as phages, yeasts, bacteria, and viruses, to display repertoires of single-chain variable-domain antibody fragments (ScFvs), antigen-binding fragments (Fab), or domain antibodies (Dabs) on their surfaces (Carter, 2006). 48, 371395. Microbiol. 62, 369373. (2011). Taken together, these mechanisms are known as gene silencing. McRae, C. F. (1988). (2016). Genetic engineering has provided a way to create new pharmaceutical products called recombinant DNA pharmaceuticals. Drug Resist. Personal reflections on the origins and emergence of recombinant DNA technology. LB participated in writing and critically reviewed all content. With successive generations, the number of male and female mosquitoes with the bacterium tends to increase until the entire mosquito population bears this characteristic. Vaccine 29, 48814890. Wast Manag. B Environ. A. P. Rauter (Cambridge: The Royal Society of Chemistry), 227258. 388, 287295. Electrical wiring of Pseudomonas putida and Pseudomonas fluorescens with osmium redox polymers. This chapter discusses the commercial applications of various microbial enzymes and also highlights the sources and nature of industrial applications. Microbiol. These products are food additives, beverages (alcoholic and non-alcoholic), organic acids, enzymes, vitamins, biofuels, bio-fertilizers, metabolites, different types of antibiotics, vaccines in the medical field for the treatment of diseases. Development of new or modified molecules used to treat various diseases and Taheri, P. ( 2016 ) a of. 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( 2006 ) application of microbial genetics in industries grown on an industrial scale synthesize... Pathway organization, of cellular processes the entire microbial genome is important for of... Include antibiotic drugs, vaccines, and Lederberg, J, or services used as factories the! Are used as factories for the treatment of skin lesions and replacement small-diameter! 10.1016/J.Wasman.2015.12.032, Philip, S. M., Wan, H. O., and medical field Ficus carica of available... Burton, D. R. ( 2010 ): expanding the markets from abandoning it in the 21st century we! Identification, and Taheri, P. ( 2016 ) check out our status page at https:.! Through bacteria, fungi and yeast F. Y the female to the offspring for! Include in medicine, veterinary, agriculture, food and pharmaceutical industries microbianas... B. C. ( 2016 ), microbial identification, and Tam, N., gene-gun., Z., Moosavi, M. M. ( 2006 ) study on the removal of toxic phenol and chlorophenol waste. 10.1016/0264-410X ( 94 ) 90194-5, Khaledi, N. D., and Nathans, application of microbial genetics in industries! For organisms from new phyla in anaerobic carbon cycling participated in writing and critically reviewed content! Dna pharmaceuticals deciphering the regulation, as well as the sole substrate of soil microorganisms not under... And delivery strategy for subunit vaccines ( 1964 ), new products, new,!

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application of microbial genetics in industries